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Swedish Pathogens Portal: supporting pandemic preparedness

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The COVID Symptom Study Sweden (CSSS) collects data on COVID-19 prevalence, symptoms, and vaccinations through a smart phone app with over 200.000 users in Sweden. Raw data can be requested for use in research projects.
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A summary of the COVID-19 and SARS-CoV-2 publications produced involving at least one contributor from a Swedish university or research institute. Shows publications over time and key words/phrases within them.
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CRUSH Covid maps outbreaks in Uppsala County by visualising the number of cases, test positivity, and geographic distribution, among other things. Data for each postal code is available for download and reuse.
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A summary of the progress in developing a multi-disease serology assay, a key component of pandemic preparedness. Information about externally produced antigens is also provided.
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The Swedish Board of Health and Welfare (Socialstyrelsen) shares data on Post COVID-19 condition. Here, we show visualisations of data on symptoms, healthcare contacts, and geographic distribution, among other things.
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Dedicated to the work of the register-based large-scale national population study to monitor COVID-19 vaccination effectiveness and safety (RECOVAC) project.
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The national Pandemic Centre (NPC) conducted testing related to SARS-CoV-2 from the start of the pandemic. They show positive, negative, and inconclusive tests. This dashboard is historic, so no longer updated.
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Estimates of SARS-CoV-2 variant frequencies and growth rate advantages from global SARS-CoV-2 genotype sequencing data
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Surveillance of viral genome sequences is crucial in tracking the spread of viral variants. This dashboard shows whole-genome sequencing data generated by Uppsala University Hospital.
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The dashboard displays the SARS-CoV-2 serology tests completed over time at the at SciLifeLab Autoimmunology and Serology Profiling unit. The number of tests in total and the amount of positive/negative tests over time are shown.
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The Swedish Health Agency (Folkhälsomyndigheten) provide data and information related to COVID-19 in Sweden. Visualisations are shown on multiple aspects of vaccination coverage, like coverage in different counties.
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Surveillance of wastewater for pathogens can be an effective means of predicting upcoming outbreaks. This dashboard contains data originating from the multiple research groups across Sweden.

Data highlights

Available datasets

Sample Collection Database

Biobanks
The Swedish COVID-19 Sample Collection Database is a tool for researchers wishing to make use of samples and data stored in various biobanks across Sweden in their research. The database allows to find sample collections matching their needs using various filters.
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Sample Collection Database screenshot

Pandemic preparedness topics

Click on one of the topics below to see only the content that is related to that topic.

Antibiotic resistance COVID-19 Enteric viruses Infectious diseases Influenza Mpox

What's new?

News about new sections, features, as well as significant milestones.